MmuEX0004258 @ mm10
Exon Skipping
Gene
ENSMUSG00000026922 | Agpat2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) [Source:MGI Symbol;Acc:MGI:1914762]
Coordinates
chr2:26594780-26596466:-
Coord C1 exon
chr2:26596291-26596466
Coord A exon
chr2:26596080-26596175
Coord C2 exon
chr2:26594780-26594852
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTTTCTACTGGCAGCTC
3' ss Score
10.05
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTCTCATGGAAATACTCCCTAAGCGCTGTGTGCAGATCGCCAAGCGTGAGCTAATGTTCACAGGGCCTGTGGGCCTCATCATGTACCTTGGGGGTGTCTACTTCATCAACCGCCAGCAAGCCAGAACTGCCATGTCTGTGATGGCCGACCTGGGCGACCTCATGGTCAAGGAGAAT
Seq A exon
CTCAAAGTGTGGATCTACCCAGAGGGTACACGCAACGACAATGGGGACCTGTTGCCCTTTAAAAAAGGAGCCTTCTACTTGGCCATCCAGGCCCAG
Seq C2 exon
GTGCCCATCATCCCCGTGGTGTACTCGTCTTTCTCTTCCTTCTACAATGTCAAGACGAAGCTCTTCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026922_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=FE(45.0=100)
A:
PF0155316=Acyltransferase=FE(24.0=100)
C2:
PF0155316=Acyltransferase=PD(6.2=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGCCTCATCATGTACCT
R:
GGTGAAGAGCTTCGTCTTGACA
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types