BtaEX6047301 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004140 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr11:104341438-104344912:+
Coord C1 exon
chr11:104341438-104341539
Coord A exon
chr11:104343527-104343571
Coord C2 exon
chr11:104344838-104344912
Length
45 bp
Sequences
Splice sites
3' ss Seq
GCTCTCTTGTGCTGCTCTAGGTG
3' ss Score
9.87
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
CTCTTTTGCTGGCAGATTTTGGAGTGGCTGAATCCTGGGGCTTTGGGGGTGAACCTCGTGGTAGAGGAGACAAAAACCAAAGTAAAACGCGTGATAAAGCAG
Seq A exon
GTGGAGTGCATTGATGAGCATCAGGCCAATGAGGCCCTGGAGGAG
Seq C2 exon
CTGATGCCGCTGCTGAAGCTTCAGCACGCCCACATCTCCATCTACCAGGAGCTCTTCATCATGTGGAACAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004140-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(11.2=88.2)
A:
PF0006920=Pkinase=FE(5.2=100)
C2:
PF0006920=Pkinase=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGATTTTGGAGTGGCT
R:
GTAGATGGAGATGTGGGCGTG
Band lengths:
139-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]