MmuEX6099796 @ mm10
Exon Skipping
Gene
ENSMUSG00000049897 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26935314-26940045:+
Coord C1 exon
chr2:26935314-26935400
Coord A exon
chr2:26937981-26938025
Coord C2 exon
chr2:26939971-26940045
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCCTGGGACCTACAGGTG
3' ss Score
7.9
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CTATTGCAAATGCTGAATCCTGGAGCCTTAGGGGTGAACCTGGTGGTGGAAGAACTGGAAACTGAAACCAAGTTCTTGATAAAGCAG
Seq A exon
GTGGAGTGTATTGATGAGCACCATGCCAACAAGGCCCTGGAGGAG
Seq C2 exon
CTGATGCCCCTGCTGAAGCTCCAACACCCCAATCTCTCTCTGTACCATGAGATGTTCATCATGTGGAACAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897-'3-10,'3-2,4-10=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(24.8=100)
A:
PF0006920=Pkinase=FE(12.4=100)
C2:
PF0006920=Pkinase=FE(21.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATCCTGGAGCCTTAGGGG
R:
TCCACATGATGAACATCTCATGGT
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types