HsaEX6063741 @ hg19
Exon Skipping
Gene
ENSG00000198870 | C9orf96
Description
chromosome 9 open reading frame 96 [Source:HGNC Symbol;Acc:28669]
Coordinates
chr9:136245907-136251475:+
Coord C1 exon
chr9:136245907-136245993
Coord A exon
chr9:136249640-136249684
Coord C2 exon
chr9:136251401-136251475
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTTGTGCCCTTGCAGGTG
3' ss Score
11.7
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GTTTTGTACCAGCTGAATCCTGGGGCCTTGGGGGTGAACCTGGTGGTGGAGGAAATGGAAACCAAAGTCAAGCATGTGATAAAGCAG
Seq A exon
GTGGAATGCATGGATGACCATTACGCCAGTCAGGCCCTGGAGGAG
Seq C2 exon
CTGATGCCACTGCTGAAGCTGCGGCACGCCCACATCTCTGTGTACCAGGAGCTGTTCATCACGTGGAATGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870-'1-5,'1-3,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.4=100)
A:
PF0006920=Pkinase=FE(5.2=100)
C2:
PF0006920=Pkinase=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAATCCTGGGGCCTT
R:
CACGTGATGAACAGCTCCTGG
Band lengths:
142-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)