BtaEX6047320 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104386558-104387753:+
Coord C1 exon
chr11:104386558-104386662
Coord A exon
chr11:104387453-104387604
Coord C2 exon
chr11:104387690-104387753
Length
152 bp
Sequences
Splice sites
3' ss Seq
GTCCCATCCGTCTCTTGCAGTGG
3' ss Score
9.13
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GACATGTGCCAGGCTCTCTCCTGCCACACAGACCCCCTGGACCCAAGCAGCTGTAGCCGCCTGCTTATTCCTCTCCTGGATGGGACAGAGTGTGGCGTGGGGAAG
Seq A exon
TGGTGCTCCAAGGGTCACTGCCGCTCGCTGGCGGAGCTGGCCCCCGTGGGGGTGGTGCACGGGCACTGGTCTGGCTGGGGGCCCGCCAGTCCTTGCTCCCGCTCCTGCGGAGGCGGCGTGATTACCAGGAGACGGCGGTGCAACAACCCCAG
Seq C2 exon
ACCTGCCTTTGGGGGGCGCACGTGCGTAGGTTCGGACCTGCAGGCCGAGATGTGCAACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093-'10-14,'10-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(52.9=52.9)
C2:
PF0009014=TSP_1=FE(41.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGTGCCAGGCTCTCTC
R:
CTGGGTGTTGCACATCTCGG
Band lengths:
169-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]