MmuEX6099810 @ mm9
Exon Skipping
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26838544-26839683:+
Coord C1 exon
chr2:26838544-26838648
Coord A exon
chr2:26839368-26839519
Coord C2 exon
chr2:26839620-26839683
Length
152 bp
Sequences
Splice sites
3' ss Seq
AGAGTTGTTTTACTTCGCAGTGG
3' ss Score
5.41
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GATGTATGCCAGGCCCTGTCCTGCCACACAGACCCCTTGGACCAAAGCAGCTGCAGCCGCCTCCTTGTTCCTCTCCTGGATGGGACAGAATGTGGTGTGGAGAAG
Seq A exon
TGGTGCTCCAAGGCTCGCTGTCGCTCCCTAGCTGAGCTGGCTCCTGTGGCTGCAGTACATGGACACTGGTCTAGCTGGGGCCCCCATAGTCCCTGCTCCCGATCCTGTGGAGGAGGTGTGATTACCAGGAGGCGGTGGTGCAACAACCCCAG
Seq C2 exon
GCCTGCATTTGGGGGACGTGCATGTGTGGGTGAAGACCTCCAGGCTAAGATGTGCAACACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(52.9=52.9)
C2:
PF0009014=TSP_1=FE(41.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTATGCCAGGCCCTGTC
R:
GCGTGTTGCACATCTTAGCCT
Band lengths:
167-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: