GgaEX1006352 @ galGal4
Exon Skipping
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6912209-6913075:+
Coord C1 exon
chr17:6912209-6912313
Coord A exon
chr17:6912742-6912893
Coord C2 exon
chr17:6913012-6913075
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTGTGTATTCTTGGTCTTAGTGG
3' ss Score
5.96
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GATATATGTAAAGTTCTCTCATGCCATGTACAACCAGGAGACAAATCCAGCTGTACTCGGCTTCTTGTTCCCCTCTTAGATGGTACTGAGTGTGGCGTCAATAAG
Seq A exon
TGGTGCTCCAAGGGACAGTGCAGCTCTCTGACAGAACTAAACCCCATGGCTGTAGTCCATGGGCAGTGGTCCAGCTGGAGCCCATTTTCCTCCTGCTCCCGCAGCTGTGGAGGTGGAGTTCAGATAAGGCAGCGGTTCTGTAATAACCCCAG
Seq C2 exon
GCCTGCTTTTGGAGGGAAGGAATGCCAGGGTGCCAGCATTCAAGCAGAGATGTGCAATACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(52.9=52.9)
C2:
PF0009014=TSP_1=FE(41.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAAGTTCTCTCATGCCATGT
R:
TGAGTATTGCACATCTCTGCTTGA
Band lengths:
162-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]