BtaEX6047325 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104381981-104382968:+
Coord C1 exon
chr11:104381981-104382064
Coord A exon
chr11:104382577-104382701
Coord C2 exon
chr11:104382822-104382968
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTGCCGGCCTCCCAGGAT
3' ss Score
6.11
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
GGGTCAGAGCTGCTGAGGGACCCATCCCTGGGGGCTCAGTTCCGAGTTCACCTGGTGAAGATGGTCATCCTGACCCAGCCTGAG
Seq A exon
GATGCTCCAGAGATCACAGCTAACATCACCGCGTCGCTGCTGAGCGTCTGTGAATGGAGCAGGACAGTGAACCCCGAGGACGACACGGACCCCGGGCATGCTGACCTGGTCCTGTACATCACCAG
Seq C2 exon
GTTTGACCTGGAATTGCCCGATGGTAACCGGCAGGTTCGGGGGGTCACCCAGCTGGGGGGCGCCTGCTCCTCCTCCTGGAGCTGCCTTATCACTGAGGATACTGGCTTTGACCTGGGGCTCACCATCGCCCATGAGATTGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.119 C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(13.0=100)
A:
PF0142114=Reprolysin=FE(19.7=100)
C2:
PF0142114=Reprolysin=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCTGAGGGACCCATC
R:
CCAATCTCATGGGCGATGGTG
Band lengths:
219-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]