RnoEX6016061 @ rn6
Exon Skipping
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5525538-5526235:+
Coord C1 exon
chr3:5525538-5525621
Coord A exon
chr3:5525850-5525974
Coord C2 exon
chr3:5526089-5526235
Length
125 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTGGTTGTTCTCTAGAAT
3' ss Score
7.58
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGGTCAGAACTGTTGAGAAACCCGTCCCTAGGGGCTCAGCTCCAAGTGCACCTGGTGAAGCTGATCATTCTCTCGGACTCAGAG
Seq A exon
AATACTCCGAATATCACGACCAACATCACCTCATCCTTGATGAGTGTCTGCGAGTGGAGCCAGACGATCAATCCCCATGATGACAGGGACCCAAGTCATGCTGACCTGATCATCTATATAACCAG
Seq C2 exon
GTTTGACCTGGAGCTGCCGGATGGTAACCAGCAGGTTCGGGGAGTCACCCAACAGGGTGGTGCCTGCTCTCCTTCCTGGAGTTGCCTTATCACTGAGGACACTGGCTTCGATCTGGGGGTCACCATTGCCCACGAGATTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.151 C2=0.180
Domain overlap (PFAM):
C1:
PF135821=Reprolysin_3=FE(21.8=100)
A:
PF135821=Reprolysin_3=FE(33.1=100)
C2:
PF135821=Reprolysin_3=FE(39.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTGTTGAGAAACCCGTCC
R:
CTGTGTCCAATCTCGTGGGC
Band lengths:
226-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]