HsaEX0002426 @ hg38
Exon Skipping
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr9:133425529-133426345:+
Coord C1 exon
chr9:133425529-133425612
Coord A exon
chr9:133425938-133426062
Coord C2 exon
chr9:133426199-133426345
Length
125 bp
Sequences
Splice sites
3' ss Seq
GCTTTGCTGTGGGTCCGCAGGGT
3' ss Score
8.79
5' ss Seq
TAGGTAGCC
5' ss Score
3.97
Exon sequences
Seq C1 exon
GGGGCAGAACTGCTTCGGGACCCGTCCCTGGGGGCTCAGTTTCGGGTGCACCTGGTGAAGATGGTCATTCTGACAGAGCCTGAG
Seq A exon
GGTGCTCCAAATATCACAGCCAACCTCACCTCGTCCCTGCTGAGCGTCTGTGGGTGGAGCCAGACCATCAACCCTGAGGACGACACGGATCCTGGCCATGCTGACCTGGTCCTCTATATCACTAG
Seq C2 exon
GTTTGACCTGGAGTTGCCTGATGGTAACCGGCAGGTGCGGGGCGTCACCCAGCTGGGCGGTGCCTGCTCCCCAACCTGGAGCTGCCTCATTACCGAGGACACTGGCTTCGACCTGGGAGTCACCATTGCCCATGAGATTGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.113 C2=0.040
Domain overlap (PFAM):
C1:
PF135821=Reprolysin_3=PU(20.7=89.3)
A:
PF135821=Reprolysin_3=FE(33.9=100)
C2:
PF135821=Reprolysin_3=FE(40.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACTGCTTCGGGACCC
R:
CCAATCTCATGGGCAATGGTGA
Band lengths:
221-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development