HsaINT1002777 @ hg38
Intron Retention
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr9:133425938-133426345:+
Coord C1 exon
chr9:133425938-133426062
Coord A exon
chr9:133426063-133426198
Coord C2 exon
chr9:133426199-133426345
Length
136 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGCC
5' ss Score
3.97
3' ss Seq
GACTGTTTTCTCTCACCGAGGTT
3' ss Score
-0.95
Exon sequences
Seq C1 exon
GGTGCTCCAAATATCACAGCCAACCTCACCTCGTCCCTGCTGAGCGTCTGTGGGTGGAGCCAGACCATCAACCCTGAGGACGACACGGATCCTGGCCATGCTGACCTGGTCCTCTATATCACTAG
Seq A exon
GTAGCCGAGCTTTCTGATGGGTGCTGGCCAGCCAGCCTGGGAAGGCTGCTCCCTCAGCCTCCTGCCCTCTGCAAAGGTGACCCCAGGGCAGGCACGTGCCTTGGCACCACCCAAGTGACTGTTTTCTCTCACCGAG
Seq C2 exon
GTTTGACCTGGAGTTGCCTGATGGTAACCGGCAGGTGCGGGGCGTCACCCAGCTGGGCGGTGCCTGCTCCCCAACCTGGAGCTGCCTCATTACCGAGGACACTGGCTTCGACCTGGGAGTCACCATTGCCCATGAGATTGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323:ENST00000371929:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF135821=Reprolysin_3=FE(33.9=100)
A:
NA
C2:
PF135821=Reprolysin_3=FE(40.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTCCAAATATCACAGCCA
R:
AATGGTGACTCCCAGGTCGAA
Band lengths:
252-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains