RnoINT0013315 @ rn6
Intron Retention
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5525850-5526235:+
Coord C1 exon
chr3:5525850-5525974
Coord A exon
chr3:5525975-5526088
Coord C2 exon
chr3:5526089-5526235
Length
114 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
AGTCTTTTTCTCTTATCGAGGTT
3' ss Score
0.4
Exon sequences
Seq C1 exon
AATACTCCGAATATCACGACCAACATCACCTCATCCTTGATGAGTGTCTGCGAGTGGAGCCAGACGATCAATCCCCATGATGACAGGGACCCAAGTCATGCTGACCTGATCATCTATATAACCAG
Seq A exon
GTATCTGAGGTCTCACCGGAGTGCCACTAGCTTAGGAGGGCTGCACTTCCCAGCTGTCTGCACCAGCAGCGTAGCTGGTGGAGCCATTCATGTGAGTCTTTTTCTCTTATCGAG
Seq C2 exon
GTTTGACCTGGAGCTGCCGGATGGTAACCAGCAGGTTCGGGGAGTCACCCAACAGGGTGGTGCCTGCTCTCCTTCCTGGAGTTGCCTTATCACTGAGGACACTGGCTTCGATCTGGGGGTCACCATTGCCCACGAGATTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780:ENSRNOT00000007640:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=0.180
Domain overlap (PFAM):
C1:
PF135821=Reprolysin_3=FE(33.1=100)
A:
NA
C2:
PF135821=Reprolysin_3=FE(39.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACCAACATCACCTCATCC
R:
AATCTCGTGGGCAATGGTGAC
Band lengths:
249-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]