MmuINT0011192 @ mm9
Intron Retention
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26833819-26834217:+
Coord C1 exon
chr2:26833819-26833943
Coord A exon
chr2:26833944-26834070
Coord C2 exon
chr2:26834071-26834217
Length
127 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCC
5' ss Score
7.91
3' ss Seq
ATTCATTTTCTCTTATCAAGGTT
3' ss Score
7.14
Exon sequences
Seq C1 exon
AGTACTCCGAATATCACGGCCAACATCACCTCATCCTTGATGAGCGTCTGCGAGTGGAGCCAGACGATCAACCCCCACGATGACAGGGATCCAAGTCACGCTGACCTGATTCTCTATATCACCAG
Seq A exon
GTATCCGAGGTTCCCATAAGAGTGCTGCTTCGTGGGAGGGCTGCACTATGAACTTCAGCTTCCCTGCTTTCTGCACCAGCAACGTGGCTGGTGCCACTGTCCTTGTGATTCATTTTCTCTTATCAAG
Seq C2 exon
GTTTGACCTGGAGTTGCCTGATGGCAACCAGCAGGTTCGGGGTGTCACCCAGCTGGGAGGTGCCTGCTCCCTTTCCTGGAGTTGCCTTATCACTGAGGATACTGGCTTTGACCTGGGGGTCACCATCGCCCATGAGATTGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-Adamts13:NM_001001322:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(19.7=100)
A:
NA
C2:
PF0142114=Reprolysin=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGCCAACATCACCTCATC
R:
CCAATCTCATGGGCGATGGTG
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: