BtaINT0014005 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104382577-104382968:+
Coord C1 exon
chr11:104382577-104382701
Coord A exon
chr11:104382702-104382821
Coord C2 exon
chr11:104382822-104382968
Length
120 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
GTCTGTTCTCTCTTCCTGAGGTT
3' ss Score
3.25
Exon sequences
Seq C1 exon
GATGCTCCAGAGATCACAGCTAACATCACCGCGTCGCTGCTGAGCGTCTGTGAATGGAGCAGGACAGTGAACCCCGAGGACGACACGGACCCCGGGCATGCTGACCTGGTCCTGTACATCACCAG
Seq A exon
GTAGCCAAGCCCCCGCAGGCATGCCAACCTGCCCGGGAGCTGCTCCCGTTCTCTGCCAAGGTGGCCGGCTGGCGGGCAGGCACCTCAGCGCCCCCTGGGTGTCTGTTCTCTCTTCCTGAG
Seq C2 exon
GTTTGACCTGGAATTGCCCGATGGTAACCGGCAGGTTCGGGGGGTCACCCAGCTGGGGGGCGCCTGCTCCTCCTCCTGGAGCTGCCTTATCACTGAGGATACTGGCTTTGACCTGGGGCTCACCATCGCCCATGAGATTGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093:ENSBTAT00000020085:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(19.7=100)
A:
NA
C2:
PF0142114=Reprolysin=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACAGCTAACATCACCGCG
R:
CCAATCTCATGGGCGATGGTG
Band lengths:
254-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development