GgaEX7009818 @ galGal4
Exon Skipping
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6909637-6910410:+
Coord C1 exon
chr17:6909637-6909720
Coord A exon
chr17:6909806-6909930
Coord C2 exon
chr17:6910264-6910410
Length
125 bp
Sequences
Splice sites
3' ss Seq
AACATATGCTTTAACTGTAGGTG
3' ss Score
8
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GGGGCAGAACTGCTGCGAGATGCCTCACTGGGTGCTCATTTCAGGGTTCATTTGATGCAAATGCTTGTTTTGAGGGAGCCAGAG
Seq A exon
GTGAATGTGAACATCACAACAAATATCACCTCCTCGCTGATCAGTGTTTGTGAGTGGAGCAAGAAGGTCAACCCCCAGAATGACTCTGATCCCCAGCATGCTGACATCGTCCTGTATGTGACCAG
Seq C2 exon
GTTTGACCTGCAGTTACCCGATGGGAACAAGGAGCTACGTGGAGTGACTCGGTTAGGTGGGGTCTGCTCCTCCTCCTGGAGCTGTGTTATTACCCAGGACACTGGCTTTGACTTGGGAGTCACCATAGCCCATGAGATTGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028-'4-7,'4-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(13.1=100)
A:
PF0142114=Reprolysin=FE(19.9=100)
C2:
PF0142114=Reprolysin=FE(23.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGCTGCGAGATGCCTC
R:
CCAATCTCATGGGCTATGGTGAC
Band lengths:
219-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]