BtaEX6047515 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021861 | COBRA1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E5S2]
Coordinates
chr11:105846842-105848402:-
Coord C1 exon
chr11:105848217-105848402
Coord A exon
chr11:105847477-105847589
Coord C2 exon
chr11:105846842-105846944
Length
113 bp
Sequences
Splice sites
3' ss Seq
ACCCTGCTTTCTCCCCACAGTTC
3' ss Score
12.78
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
GTGGTGCAGAGGCTGACGAGGATGGTGGGGCGCAACGTGAAGCTGTACGACATGGTCCTGCAGTTCCTGCGCACGCTCTTCCTGCGCACGCGCAATGTGCACTACTGCACACTGCGCGCCGAGCTGCTCATGTCCCTGCACGACCTGGACGTCGGCGACATCTGCTCCGTGGACCCCTGCCACAAG
Seq A exon
TTCACCTGGTGCCTGGACGCTTGCATCCGAGAGCGGTTTGTGGACAGCAAGAGGGCCCGCGAGCTGCAGGGCTTCCTTGACGGAGTGAAGAAGGGGCAGGAGCAAGTTCTGGG
Seq C2 exon
GGACCTATCCATGATCCTGTGTGACCCCTTCGCCATCAACACCCTGTCTCTGAGCACCGTCAGGCACCTGCAGGAGCTGGTGGGCCAGGAGGTGCTACCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021861-'5-9,'5-8,6-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(12.8=100)
A:
PF062098=COBRA1=FE(7.8=100)
C2:
PF062098=COBRA1=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACGACATGGTCCTGCAG
R:
CCTGGGTAGCACCTCCTGG
Band lengths:
247-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]