GgaEX6014843 @ galGal3
Exon Skipping
Gene
ENSGALG00000008532 | Q5ZLK9_CHICK
Description
NA
Coordinates
chr17:2305780-2308092:+
Coord C1 exon
chr17:2305780-2305965
Coord A exon
chr17:2307225-2307337
Coord C2 exon
chr17:2307990-2308092
Length
113 bp
Sequences
Splice sites
3' ss Seq
CATTCTCATTTTCTGAGCAGTTC
3' ss Score
5.32
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTGGTTCAGAAGCTGACTCAGATGATTGGGAAGAATGTGAAGCTCTATGACATGGTGTTGCAGTTCCTGAGAACTTTATTCCTCCGGACAAGGAATGTGCATTACTGCACGCTGCGGGCAGAGCTCCTGATGTCACTGCATGATCTGGAAATCAGTGAAATCTGCACTGTTGACCCCTGTCATAAG
Seq A exon
TTCACGTGGTGCCTTGATGCCTGCATTCGGGAGAAGTTTGTGGACAACAAGAGAGCTCGGGAATTGCAAGGCTTTCTGGATGGAGTGAAGAAAGGACAAGAGCAAGTTTTGGG
Seq C2 exon
GGACTTATCGATGATCTTGTGTGATCCCTTTGCCATTAACACCTTAGCCCTGAGTACCATAAGGCACCTGCAGGACCTAGTTGGGCAGGACACCTTACCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008532-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(12.9=100)
A:
PF062098=COBRA1=FE(7.8=100)
C2:
PF062098=COBRA1=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTCAGAAGCTGACTCAGA
R:
TGCCTTATGGTACTCAGGGCT
Band lengths:
252-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]