BtaEX6047576 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046775 | MAN1B1
Description
mannosidase, alpha, class 1B, member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
Coordinates
chr11:106126150-106127632:-
Coord C1 exon
chr11:106127442-106127632
Coord A exon
chr11:106126804-106126924
Coord C2 exon
chr11:106126150-106126347
Length
121 bp
Sequences
Splice sites
3' ss Seq
GGCCCCGCTGGTCTGCATAGGCT
3' ss Score
4.87
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GAGGCTGCAGAGGAGGTGACGAGACGTGTGCATGCCCTGCACGGGAAGCTGGACGGGCTGGTGCCCATGTTCATCAACACCAACAGCGGCAGCTTCACCCACCTGGGCATGTTCACCCTGGGCGCCAGGGCCGACAGCTACTACGAGTACCTGCTGAAGCAGTGGATCCAGGGCGGGAAGAAGGAGCGGCA
Seq A exon
GCTGCTGGAAGACTACCTGGAAGCCGTGGACGGGATCAGGAAGCACCTGCTCGCCAGGTCTGAGCCCAGGAAGCTGACCTTCGTGGGGGAGCTCAACCACGGCCGCTTCAGCGCCAAGATG
Seq C2 exon
GACCACCTGGTGTGCTTCCTGCCTGGGACACTGGCTCTGGGTGCCCACCATGGCCTGCCTGCTGAGCACATGGAGCTGGCCCAGGCACTCATGGACACCTGCTACCAGATGTACCGTCAGATGGAGACGGGGCTGAGCCCCGAGACCGCACACTTCAACCTCCACCACACAAAGATCCTTAAGGACGTTCAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046775-'15-27,'15-24,16-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(14.3=100)
A:
PF0153215=Glyco_hydro_47=FE(9.1=100)
C2:
PF0153215=Glyco_hydro_47=FE(14.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGCCCATGTTCATCAA
R:
TGGTAGCAGGTGTCCATGAGT
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]