GgaEX1034697 @ galGal4
Exon Skipping
Gene
ENSGALG00000009079 | MAN1B1
Description
mannosidase, alpha, class 1B, member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
Coordinates
chr17:335417-339481:-
Coord C1 exon
chr17:339291-339481
Coord A exon
chr17:337904-338024
Coord C2 exon
chr17:335417-335614
Length
121 bp
Sequences
Splice sites
3' ss Seq
GGAATGGTTTTAATTTACAGACT
3' ss Score
5.01
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AAAGCTGTTGATGAGGTGATGAAACATGTTCACACCCTTTCAGGGAAAAATGATGGACTGGTGCCTATGTTCATAAACACCAACAGTGGGCAGTTCACTCACTTAGGTGTTTATACTCTGGGAGCCAGAGCTGACAGCTACTATGAGTATTTACTCAAGCAGTGGATTCAGGGTGGGAAAACAGAAAATGA
Seq A exon
ACTGTTGGAGGACTATATGAAAGCCATAGAAGGCGTGAAAAAGCATCTTCTTCAGAGATCACAACCCAAGAAGCTTACCTTTGTAGGAGAGCTTGCTCATGGCCATTTCAGTGCCAAGATG
Seq C2 exon
GATCACTTGGTTTGTTTTCTGCCTGGGACTTTGGCTCTGGGAGCTCACAATGGATTGACTGCTGATCATATGAAGCTGGCCGAAGCCCTGATAGAAACATGTTACCAGATGTATGCACAAGTAGAGACAGGCCTGAGTCCAGAGATTGTGCACTTCAATCTCCATGCACAAAAGGGCCACAAAGATGTAGAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009079_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(14.3=100)
A:
PF0153215=Glyco_hydro_47=FE(9.1=100)
C2:
PF0153215=Glyco_hydro_47=FE(14.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGTGGGCAGTTCACTCAC
R:
ATCTCTGGACTCAGGCCTGTC
Band lengths:
256-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]