MmuEX6099476 @ mm9
Exon Skipping
Gene
ENSMUSG00000036646 | Man1b1
Description
mannosidase, alpha, class 1B, member 1 [Source:MGI Symbol;Acc:MGI:2684954]
Coordinates
chr2:25203556-25204887:+
Coord C1 exon
chr2:25203556-25203746
Coord A exon
chr2:25204091-25204211
Coord C2 exon
chr2:25204690-25204887
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTGATGTGTGCTCTTCACAGGTT
3' ss Score
9.8
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAGGCCGTGGAGGAAGTGACAAAGCACATCCACTCCCTGTCTGGGAAGAAAGACGGGCTGGTGCCTATGTTCATCAACACGAACAGCGGCCTCTTCACCCACCCAGGAGTGTTCACCTTGGGGGCCAGGGCTGACAGCTACTACGAATACCTGCTGAAACAGTGGATCCAGGGTGGCAAGAAGGAGACACA
Seq A exon
GTTGCTGGAAGACTATGTTAAAGCCATTGAGGGGATAAAAGCCCATCTGCTCCGGCAGTCTCAGCCCAGAAAGCTCACCTTCGTGGGAGAACTTGCCCACGGCCGCTTCAGTGCCAAGATG
Seq C2 exon
GACCACTTAGTGTGCTTCCTGCCGGGGACGCTGGCTTTGGGTGTCCACCATGGCCTGCCAGCTGACCACATGGATCTAGCTCGGGCCCTCATGGAGACCTGCTACCAGATGAACCAACAGATGGAGACAGGTCTGAGCCCTGAGATTGCACATTTCAACATGTACCCTCGGGCAGATCATAAAGATGTGGAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036646-'16-18,'16-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(14.3=100)
A:
PF0153215=Glyco_hydro_47=FE(9.1=100)
C2:
PF0153215=Glyco_hydro_47=FE(14.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCAGGAGTGTTCACCTTG
R:
GTGCAATCTCAGGGCTCAGAC
Band lengths:
243-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: