DreEX6011226 @ danRer10
Exon Skipping
Gene
ENSDARG00000076592 | man1b1b
Description
mannosidase, alpha, class 1B, member 1b [Source:ZFIN;Acc:ZDB-GENE-070705-482]
Coordinates
chr5:28585984-28588991:-
Coord C1 exon
chr5:28588801-28588991
Coord A exon
chr5:28586262-28586382
Coord C2 exon
chr5:28585984-28586178
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTTCCATGTATTCAGATT
3' ss Score
8.08
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
CTGGCTGTGATGGAGGTGATGAAGCAGGTGCACAAACTGGATGGAAAGCAAGATGGGCTTGTGCCGATGTTTATCAATACCAACAATGGACTGTTCACCCATCAGGGCATTTACACGCTAGGCGCCAGGGCTGACAGCTACTATGAGTATCTGCTTAAGCAGTGGATACAGGGAGGCAGAATCGAGCAGGA
Seq A exon
ATTGCTGGAGGACTATCTGCAGGCTGTGGAAGGAGTGAAGAAGAACCTGCTGAAGAAATCGACACCTCTTGGCCTTACATTTGTAGGAGAGTTGTCCCATGGACACTTCAGTCCCAAAATG
Seq C2 exon
GACCATTTGGTATGTTTCCTGCCTGGCACGTTGGCACTGGGGGTGCATTACGGCCTTCCCGCTGATCATATGGAGCTTGCGAAACAGCTGATAGAGACCTGCTACCAGATGTATGCACAGATGGAGACCGGTCTGAGTCCAGAAATAGCCCATTTCAACATGCACGATGGTAGCACACAGGATGTAGATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076592-'11-16,'11-15,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(14.4=100)
A:
PF0153215=Glyco_hydro_47=FE(9.1=100)
C2:
PF0153215=Glyco_hydro_47=FE(14.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGGTGCACAAACTGGAT
R:
CATATGATCAGCGGGAAGGCC
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]