BtaEX6047581 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048054 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr11:106158925-106160074:-
Coord C1 exon
chr11:106159902-106160074
Coord A exon
chr11:106159467-106159660
Coord C2 exon
chr11:106158925-106159065
Length
194 bp
Sequences
Splice sites
3' ss Seq
CCATCCTGTCGAGGCTGCAGGTG
3' ss Score
-0.89
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
ATGGCAATGGGGGCCTGTACAGCGCGCTGGAGGACCACCAGATCCTAGAGGACATGGAGCGGCGAGGAGTGGAGTTCGTGCACGTGTACTGTGTGGACAACATCCTGGTGCGGCTGGCCGACCCGCTCTTCATAGGCTTCTGCGTGCTGCGGGGCGCCGACTGTGGAGCCAAG
Seq A exon
GTGGTGGAGAAGGCGTACCCTGAGGAGCCAGTGGGCGTGGTGTGCCAGGTGGACGGCGTCCCCCAGGTGGTGGAGTACAGCGAGATCAGCCCCGAGGTGGCGCAGCTGCGCGCGCCAGGTGGGGGCCTGCTGTACAACGCAGGCAACATCTGCAACCACTTCTTCACCCGAGACTTCCTCCGGACGGTCACCAG
Seq C2 exon
GGAGCTCGAGCCCCTGCTGCAGCCACACGTGGCTGTGAAGAAGGTCCCCTGTGTGGATGAGCACGGGAACCCAGTAAAGCCGCTGCAGCCGAACGGGATCAAGATGGAGAAGTTCGTGTTTGACGTGCTCCCGTTTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048054-'4-6,'4-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(15.2=100)
A:
PF0170413=UDPGP=FE(17.1=100)
C2:
PF0170413=UDPGP=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGACCACCAGATCCTAG
R:
CATCTTGATCCCGTTCGGCTG
Band lengths:
252-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]