GgaEX0013358 @ galGal3
Exon Skipping
Gene
ENSGALG00000009090 | UAP1L1
Description
NA
Coordinates
chr17:738897-741383:-
Coord C1 exon
chr17:741211-741383
Coord A exon
chr17:739984-740180
Coord C2 exon
chr17:738897-739037
Length
197 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTCCTGTGGCTGCAGGTG
3' ss Score
9.43
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATGGCAATGGTGGCTTATATCGTGCTTTGGTGGATAATAAGATCTTGGATGACATGAAGCAGCGTGGTATCCAGTATGTCCACGTGTACTGTGTAGACAACATTCTTGTCAAAATGGCAGATCCAGTCTTCATAGGCTTCTGTGTTTCCAAAGGAGCAGATTGTGGTGCCAAG
Seq A exon
GTGGTGGAGAAGGCCTACCCCACAGAGCCTATTGGGGTGGTGTGCCGTGTGGATGGGGTCTCTCATGTGGTGGTGGAGTACAGTGAGATCAGCCCAGAGACTGCGCAGCAGCGAAGACCTGATGGGGGGCTGATGTACAGCGTTGGCAATATCTGCAACCATTTCTTCACTGTTGAGTTTCTGCAGACAGTGGCCCA
Seq C2 exon
AAAACACGAGTCCCAGCTGAAGCACCACGTGGCCATAAAGAAGGTGCCTTACATTGATGAGGAGGGAAATCTGGTAAAACCACTAAAACCGAATGGAATAAAGCTGGAGAAGTTTGTGTTTGATGTGTTCCAGTTCTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009090-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(14.4=100)
A:
PF0170413=UDPGP=FE(16.4=100)
C2:
PF0170413=UDPGP=FE(11.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGAAGCAGCGTGGTATCC
R:
TCAAACACAAACTTCTCCAGCT
Band lengths:
245-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]