MmuEX6099488 @ mm9
Exon Skipping
Gene
ENSMUSG00000026956 | Uap1l1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Source:MGI Symbol;Acc:MGI:2443318]
Coordinates
chr2:25218764-25219793:-
Coord C1 exon
chr2:25219621-25219793
Coord A exon
chr2:25219326-25219519
Coord C2 exon
chr2:25218764-25218904
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCTATGCCCGGTGGCTGCAGGTG
3' ss Score
6.1
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATGGCAACGGGGGTTTGTACTGTGCACTGGCTGACCACCAGATCCTGGAGGACATGAAGCAGCGGGGTGTGGAGTTTGTGCATGTGTACTGCGTAGACAACATCTTGGTGCGGCTGGCTGACCCAGTCTTCATTGGCTTCTGTGTGCTTCAGGGAGCAGACTGTGGTGCTAAG
Seq A exon
GTGGTGGAGAAAGCATACCCTGAGGAGCCAGTGGGTGTGGTGTGCCAGGTGGATGGTGTCCCCCAGGTGGTGGAATACAGCGAGATCAGCCCTGAGATTGCTGGGCAGCTCGGGGCTGATGGAGGCTTGCTCTACAACGCAGGCAACATCTGCAACCATTTCTTCACCAGAGGCTTCCTGGATGTGGTTACCAG
Seq C2 exon
GGAGTTTGAGCCCTTGCTGAGGCTGCATGTGGCCATGAAGAAGGTCCCATACGTGGATGAGGAGGGAAATCTGGTAAAGCCGCTAAGACCGAATGGGATAAAGATGGAGAAGTTTGTGTTTGATGTGTTCCAGTTTGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026956-'5-10,'5-5,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(14.7=100)
A:
PF0170413=UDPGP=FE(16.5=100)
C2:
PF0170413=UDPGP=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGTACTGTGCACTGGCT
R:
CCATTCGGTCTTAGCGGCTTT
Band lengths:
258-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: