GgaEX0013358 @ galGal4
Exon Skipping
Gene
ENSGALG00000009090 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr17:359072-364688:-
Coord C1 exon
chr17:364484-364688
Coord A exon
chr17:360159-360355
Coord C2 exon
chr17:359072-359212
Length
197 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTCCTGTGGCTGCAGGTG
3' ss Score
9.43
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GTTTGCACCAGATCTCACAGAACAAAGTGGCAGTGCTGCTGCTGGCTGGAGGACAAGGAACCCGCCTGGGAGTGAGCTACCCCAAGGGCATGTACAATGTGGGACTGCCCAGTGGCAAAACCTTGTATCAGATCCAAGCAGAAAGGATCCGCAAAGTGGAGCAGCTCGCTGGCCAGAGGCACCACTGCAAGTGTACCATCCCCTG
Seq A exon
GTGGTGGAGAAGGCCTACCCCACAGAGCCTATTGGGGTGGTGTGCCGTGTGGATGGGGTCTCTCATGTGGTGGTGGAGTACAGTGAGATCAGCCCAGAGACTGCGCAGCAGCGAAGACCTGATGGGGGGCTGATGTACAGCGTTGGCAATATCTGCAACCATTTCTTCACTGTTGAGTTTCTGCAGACAGTGGCCCA
Seq C2 exon
AAAACACGAGTCCCAGCTGAAGCACCACGTGGCCATAAAGAAGGTGCCTTACATTGATGAGGAGGGAAATCTGGTAAAACCACTAAAACCGAATGGAATAAAGCTGGAGAAGTTTGTGTTTGATGTGTTCCAGTTCTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009090_MULTIEX1-3/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(17.2=100)
A:
PF0170413=UDPGP=FE(16.4=100)
C2:
PF0170413=UDPGP=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCAGATCTCACAGAACA
R:
GCACCTTCTTTATGGCCACGT
Band lengths:
249-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]