BtaEX6047639 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015074 | PTGDS
Description
Bos taurus prostaglandin D2 synthase 21kDa (brain) (PTGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_174791]
Coordinates
chr11:106248079-106249071:-
Coord C1 exon
chr11:106248955-106249071
Coord A exon
chr11:106248712-106248813
Coord C2 exon
chr11:106248079-106248104
Length
102 bp
Sequences
Splice sites
3' ss Seq
GGCTGCTCCCCACTGCCCAGGCC
3' ss Score
4.69
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ACTGGAGCAGCACCCACGAGGTGTCAGTGGCAGAGACAGACTACGAGACCTACGCCCTGCTCTACACAGAGGGTGTCCGAGGCCCGGGGCAGGACTTCCGCATGGCCACGCTCTACA
Seq A exon
GCCGCTCCCAGAACCCCCGAGCCGAGGTCAAGGAACACTTCACCACCTTTGCCAAGAGCCTGGGCTTCACAGAGGAAGGCATTGTGTTCCTGCCGAAGACTG
Seq C2 exon
ACAAGTGCATGGAGGAGCACCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015074-'9-15,'9-11,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(26.9=100)
A:
PF0006118=Lipocalin=FE(23.4=100)
C2:
PF0006118=Lipocalin=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCAGCACCCACGAG
R:
CTATGGGTGCTCCTCCATGCA
Band lengths:
142-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]