MmuEX0037681 @ mm10
Exon Skipping
Gene
ENSMUSG00000015090 | Ptgds
Description
prostaglandin D2 synthase (brain) [Source:MGI Symbol;Acc:MGI:99261]
Coordinates
chr2:25467287-25468188:-
Coord C1 exon
chr2:25468072-25468188
Coord A exon
chr2:25467818-25467919
Coord C2 exon
chr2:25467287-25467345
Length
102 bp
Sequences
Splice sites
3' ss Seq
GACCGTTCTTTATCTACCAGGCA
3' ss Score
8.39
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
ACTCGGGCAGCATCCACTCCGTGTCAGTGGTGGAGGCCAACTATGACGAGTACGCTCTGCTATTCAGCAGAGGCACCAAGGGCCCAGGCCAGGACTTCCGCATGGCCACCCTCTACA
Seq A exon
GCAGAACCCAGACTCTGAAGGACGAGCTGAAGGAGAAATTCACCACCTTTAGCAAGGCCCAGGGCCTCACAGAGGAGGACATTGTTTTCCTGCCCCAACCGG
Seq C2 exon
ATAAGTGCATTCAAGAGTAAACGCAGGTGAGAGAAGTCAGTCAGAGGGCTGGTCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015090-'13-23,'13-21,15-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(26.9=100)
A:
PF0006118=Lipocalin=FE(23.4=100)
C2:
PF0006118=Lipocalin=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCATCCACTCCGTGTC
R:
CATGTGACCAGCCCTCTGACT
Band lengths:
170-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types