GgaEX7009661 @ galGal4
Exon Skipping
Gene
ENSGALG00000028529 | PTGDS
Description
prostaglandin-H2 D-isomerase precursor [Source:RefSeq peptide;Acc:NP_989590]
Coordinates
chr17:509396-509942:-
Coord C1 exon
chr17:509829-509942
Coord A exon
chr17:509575-509676
Coord C2 exon
chr17:509396-509421
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCACCCTGCTCTTTCCGCAGGCC
3' ss Score
12.51
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GCTGGGGCAGCAACCATGACATCCGTGTGGTGGAGACCAACTATGACGAGTATGCCCTGGTGGCCACCCAGATCTCCAAGAGCACCGGCTCCTCCAACATGGTGCTGCTCTACA
Seq A exon
GCCGCACCAAGGAGGTTGCACCCCAGCGCCTGGAGAGGTTCATGCAGTTCTCCCAGGAGCAGGGCCTGAAGGACGAGGAGATCCTCATCCTACCCCAGACGG
Seq C2 exon
ACAAGTGTATGGCAGATGCTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028529-'5-10,'5-7,6-10=AN
Average complexity
A_S
Mappability confidence:
89%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.086 C2=0.125
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(26.6=100)
A:
PF0006118=Lipocalin=FE(23.8=100)
C2:
PF0006118=Lipocalin=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGCAACCATGACATCC
R:
CAGCATCTGCCATACACTTGT
Band lengths:
131-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]