MmuEX0037681 @ mm9
Exon Skipping
Gene
ENSMUSG00000015090 | Ptgds
Description
prostaglandin D2 synthase (brain) [Source:MGI Symbol;Acc:MGI:99261]
Coordinates
chr2:25322840-25323708:-
Coord C1 exon
chr2:25323592-25323708
Coord A exon
chr2:25323338-25323439
Coord C2 exon
chr2:25322840-25322865
Length
102 bp
Sequences
Splice sites
3' ss Seq
GACCGTTCTTTATCTACCAGGCA
3' ss Score
8.39
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
ACTCGGGCAGCATCCACTCCGTGTCAGTGGTGGAGGCCAACTATGACGAGTACGCTCTGCTATTCAGCAGAGGCACCAAGGGCCCAGGCCAGGACTTCCGCATGGCCACCCTCTACA
Seq A exon
GCAGAACCCAGACTCTGAAGGACGAGCTGAAGGAGAAATTCACCACCTTTAGCAAGGCCCAGGGCCTCACAGAGGAGGACATTGTTTTCCTGCCCCAACCGG
Seq C2 exon
ATAAGTGCATTCAAGAGTAAACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015090-'4-9,'4-8,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(26.9=100),PF0144313=Viral_helicase1=PU(47.4=90.0)
A:
PF0006118=Lipocalin=FE(23.4=100),PF0144313=Viral_helicase1=FE(44.7=100)
C2:
PF0006118=Lipocalin=PD(0.1=0.0),PF0144313=Viral_helicase1=PD(6.6=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGGGCAGCATCCACT
R:
TGCGTTTACTCTTGAATGCACT
Band lengths:
142-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: