BtaEX6049088 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002725 | RNGTT
Description
Bos taurus RNA guanylyltransferase and 5'-phosphatase (RNGTT), mRNA. [Source:RefSeq mRNA;Acc:NM_001046085]
Coordinates
chr9:62081430-62140267:+
Coord C1 exon
chr9:62081430-62081594
Coord A exon
chr9:62111223-62111291
Coord C2 exon
chr9:62140167-62140267
Length
69 bp
Sequences
Splice sites
3' ss Seq
TATATATGTTTATTTTATAGCTA
3' ss Score
8.06
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GCACAGCCGGTTGGAGATTGTGATTTTAATATTCGTCTTCAGTGTATAGAAAGAGAAATAATAAATCCTCGACATGAAAAAATGAAGACAGGGCTCATTGACAAAACACAGGAACCATTCAGTGTCAGACATAAGCCATTTTTTGACATCTATGCTTCAAGAAAG
Seq A exon
CTACTTGAAGGAAATTTTGCCAAAGAAGTCAGCCATGAAATGGATGGACTTATTTTCCAGCCCACTGGA
Seq C2 exon
AAATACAAACCTGGTCGATGTGATGATATTTTGAAATGGAAGCCTCCCAGTCTTAATTCTGTGGATTTTCGCCTAAAAATAACAAGAATGGGAGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002725-'17-23,'17-20,18-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(28.6=100)
A:
PF0133114=mRNA_cap_enzyme=FE(11.6=100)
C2:
PF0133114=mRNA_cap_enzyme=PD(6.9=38.2),PF0391910=mRNA_cap_C=PU(17.3=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCATTGACAAAACACAGG
R:
CCTTCTCCTCCCATTCTTGTT
Band lengths:
176-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]