GgaEX1049775 @ galGal3
Exon Skipping
Gene
ENSGALG00000015787 | RNGTT
Description
NA
Coordinates
chr3:78636233-78687544:+
Coord C1 exon
chr3:78636233-78636397
Coord A exon
chr3:78658791-78658859
Coord C2 exon
chr3:78687444-78687544
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTTTAATTCTATTTTGTAGCTC
3' ss Score
8.4
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GGACAGCCAGTTGGAGACTGTGATTTTAATGTTCGACTTTCATGTATAGAGAAAGAGATTATATTTCCACGACATGAAAAAATGAAGACAGGTCACATTGACAAAGCACAGGAACCGTTCAGTGTTCGAAACAAACCATTCTTTGACATCTATGCTTCAAGAAAG
Seq A exon
CTCCTGGAAGGAAGCTTTGCTAGAGAAGTTAGCCACGAAGTGGATGGATTGATATTTCAGCCTACAGGA
Seq C2 exon
AAATACAAGCCTGGTCGATGTGACGATATTCTGAAATGGAAGCCACCCAGCCTGAACTCTGTTGATTTTCGTCTGAAGATAACGAGAATTGGTGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015787-'17-21,'17-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(28.6=100)
A:
PF0133114=mRNA_cap_enzyme=FE(11.6=100)
C2:
PF0133114=mRNA_cap_enzyme=PD(6.9=38.2),PF0391910=mRNA_cap_C=PU(17.3=50.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAAGCACAGGAACCGTT
R:
CCTTCTCCACCAATTCTCGTT
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]