DreEX0062741 @ danRer10
Exon Skipping
Gene
ENSDARG00000032261 | rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-2087]
Coordinates
chr20:950391-1004115:-
Coord C1 exon
chr20:1003951-1004115
Coord A exon
chr20:990982-991050
Coord C2 exon
chr20:950391-950491
Length
69 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTGCTTTGTTCTCAGCTC
3' ss Score
7.31
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGTCAACCGGTGGGTCAGTGTGACTTCAACAGACGTCTGCTGTGTATCGAGAAGGAGATCATCTCCCCACGCTTTGAGAAAATGAAGCTGGGCCAGATCGACAAAGCCAAGGAGCCCTTCAGTGTCAGGAATAAGCCTTTCTTCGACATCCACGCTGCGCGCAAG
Seq A exon
CTCCTGGAGGGCAGTTTCACCTCGCAGGTCAGCCATGAAGTGGATGGTCTCATCTTCCAGCCTATAGGG
Seq C2 exon
AAATATAAGCCAGGCCGATGTGATGACATCCTGAAGTGGAAGCCGCCGAGTCACAACTCTGTGGATTTCAGACTCAAGATCACCAAAGTCGGCGGCGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032261-'10-16,'10-14,11-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(28.6=100)
A:
PF0133114=mRNA_cap_enzyme=FE(11.6=100)
C2:
PF0133114=mRNA_cap_enzyme=PD(6.9=38.2),PF0391910=mRNA_cap_C=PU(17.3=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGAAGCTGGGCCAGATCG
R:
CGCCGACTTTGGTGATCTTGA
Band lengths:
180-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]