MmuEX0040222 @ mm10
Exon Skipping
Gene
ENSMUSG00000028274 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:MGI Symbol;Acc:MGI:1329041]
Coordinates
chr4:33368573-33404253:+
Coord C1 exon
chr4:33368573-33368737
Coord A exon
chr4:33379369-33379437
Coord C2 exon
chr4:33404153-33404253
Length
69 bp
Sequences
Splice sites
3' ss Seq
AATATCTTTTTATTTTATAGCTT
3' ss Score
8.94
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GCACAACCAGTTGGAGACTGTGATTTTAATATTCGTCTACAGTGTATTGAACGTGAAATTATAAGTCCACGACATGAAAAAATGAAGACTGGACTCATTGACAAAACACAGGAACCATTTAGTGTCAGACCTAAACAATTTTTTGACATCAATATTTCAAGAAAG
Seq A exon
CTTCTGGAAGGAAATTTTGCCAAAGAAGTCAGCCATGAAATGGATGGACTTATTTTTCAGCCTATTGGA
Seq C2 exon
AAATACAAGCCTGGTCGATGTGATGACATTTTGAAATGGAAACCTCCCAGTCTAAACTCTGTGGATTTTCGACTTAAGATAACAAGAATGGGAGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028274_MULTIEX3-2/7=C1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(28.6=100)
A:
PF0133114=mRNA_cap_enzyme=FE(11.6=100)
C2:
PF0133114=mRNA_cap_enzyme=PD(6.9=38.2),PF0391910=mRNA_cap_C=PU(19.3=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTCATTGACAAAACACAGGA
R:
CCTTCTCCTCCCATTCTTGTT
Band lengths:
177-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types