BtaEX6049090 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002725 | RNGTT
Description
Bos taurus RNA guanylyltransferase and 5'-phosphatase (RNGTT), mRNA. [Source:RefSeq mRNA;Acc:NM_001046085]
Coordinates
chr9:62066533-62081594:+
Coord C1 exon
chr9:62066533-62066668
Coord A exon
chr9:62075577-62075648
Coord C2 exon
chr9:62081430-62081594
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTTTCTCTTTCAAGGAA
3' ss Score
11.14
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTATATGATGTTGATTGATGGCACAAATGAAGTTTTTATGATTGATAGAGATAATTCAGTGTTTCATGTTTCAAATCTGGAATTTCCATTTCGTAAAGATCTCCGTATGCATTTATCAAATACTCTGTTAGATGGG
Seq A exon
GAAATGATTATTGACAGAGTTAATGGACAGGCCGTTCCTAGATACTTGATATATGACATAATTAAATTCAAT
Seq C2 exon
GCACAGCCGGTTGGAGATTGTGATTTTAATATTCGTCTTCAGTGTATAGAAAGAGAAATAATAAATCCTCGACATGAAAAAATGAAGACAGGGCTCATTGACAAAACACAGGAACCATTCAGTGTCAGACATAAGCCATTTTTTGACATCTATGCTTCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002725-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
A:
PF0133114=mRNA_cap_enzyme=FE(12.2=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(28.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGTAAAGATCTCCGTATGCA
R:
TGACACTGAATGGTTCCTGTGT
Band lengths:
174-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]