DreEX6043520 @ danRer10
Exon Skipping
Gene
ENSDARG00000032261 | rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-2087]
Coordinates
chr20:1003951-1044121:-
Coord C1 exon
chr20:1043986-1044121
Coord A exon
chr20:1043381-1043452
Coord C2 exon
chr20:1003951-1004115
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATGGTTCTGTTGTGTTGCAGGAG
3' ss Score
10.05
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GTACATGATGTTGATAGATGGGAGAAATGAAGTTTACATGATCGACAGAGACAACTCTGTCTTCCACATAGAAAACCTGGAGTTTCCCTTCCGGAAGGATCTGCGCATCCACCTTTCCAACACACTTTTGGATGGG
Seq A exon
GAGATGATTATCGACAAGGTGAACGGCCAGCCTGTCCCACGCTATCTCATCTATGACATCATCAAGTTTAGC
Seq C2 exon
GGTCAACCGGTGGGTCAGTGTGACTTCAACAGACGTCTGCTGTGTATCGAGAAGGAGATCATCTCCCCACGCTTTGAGAAAATGAAGCTGGGCCAGATCGACAAAGCCAAGGAGCCCTTCAGTGTCAGGAATAAGCCTTTCTTCGACATCCACGCTGCGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032261-'8-12,'8-10,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
A:
PF0133114=mRNA_cap_enzyme=FE(12.2=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(28.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGCGCATCCACCTTTCC
R:
CTGACACTGAAGGGCTCCTTG
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]