MmuEX6092677 @ mm9
Exon Skipping
Gene
ENSMUSG00000028274 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:MGI Symbol;Acc:MGI:1329041]
Coordinates
chr4:33443036-33455712:+
Coord C1 exon
chr4:33443036-33443171
Coord A exon
chr4:33449855-33449926
Coord C2 exon
chr4:33455548-33455712
Length
72 bp
Sequences
Splice sites
3' ss Seq
GCATCTTTGTTTCTTTTAAGGAA
3' ss Score
9.59
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TTACATGATGTTGATTGATGGCACAAATGAAGTTTTTATGATTGACAGAGATAATTCCGTTTTTCATGTTTCAAATCTGGAATTTCCATTTCGTAAAGATCTTCGCATGCATTTATCAAATACTCTTTTGGATGGG
Seq A exon
GAAATGATCATTGACAAAGTAAATGGACAGGCCGTCCCAAGATATTTGATCTATGACATAATTAAGTTCAAT
Seq C2 exon
GCACAACCAGTTGGAGACTGTGATTTTAATATTCGTCTACAGTGTATTGAACGTGAAATTATAAGTCCACGACATGAAAAAATGAAGACTGGACTCATTGACAAAACACAGGAACCATTTAGTGTCAGACCTAAACAATTTTTTGACATCAATATTTCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028274-'12-16,'12-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
A:
PF0133114=mRNA_cap_enzyme=FE(12.2=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(28.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAAAGATCTTCGCATGCA
R:
GGTCTGACACTAAATGGTTCCTGT
Band lengths:
177-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: