RnoEX0076567 @ rn6
Exon Skipping
Gene
ENSRNOG00000007867 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:RGD Symbol;Acc:1311410]
Coordinates
chr5:48607352-48623756:+
Coord C1 exon
chr5:48607352-48607487
Coord A exon
chr5:48619157-48619228
Coord C2 exon
chr5:48623592-48623756
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATATCTTTGTTTCTTTCAAGGAA
3' ss Score
9.54
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TTACATGATGTTGATTGATGGCACAAATGAAGTTTTTATGATTGACAGAGATAATTCCGTTTTTCATGTTTCAAATCTGGAATTTCCATTTCGTAAAGATCTCCGCATGCATTTATCAAATACTCTTTTGGATGGG
Seq A exon
GAAATGATCATCGATAAAGTAAATGGACAGGCCGTTCCAAGATATTTGATATATGACATAATTAAGTTCAAT
Seq C2 exon
GCACAACCAGTTGGAGAATGTGATTTTAATATTCGTCTACAGTGTATTGAACGTGAAATTATAAGTCCACGACATGAAAAAATGAAGACTGGGCTCATTGACAAAACACAAGAACCATTTAGTGTCAGACCTAAACAATTTTTTGACATCAATATTTCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007867-'13-15,'13-14,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
A:
PF0133114=mRNA_cap_enzyme=FE(12.2=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(28.9=100),PF0391910=mRNA_cap_C=PU(12.8=21.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAAAGATCTCCGCATGCA
R:
AGGTCTGACACTAAATGGTTCTTGT
Band lengths:
178-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]