BtaEX6050370 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001271 | PLG
Description
Bos taurus plasminogen (PLG), mRNA. [Source:RefSeq mRNA;Acc:NM_173951]
Coordinates
chr9:98031497-98038354:-
Coord C1 exon
chr9:98038195-98038354
Coord A exon
chr9:98033732-98033904
Coord C2 exon
chr9:98031497-98031645
Length
173 bp
Sequences
Splice sites
3' ss Seq
TATTGCTGTGGAATTTACAGTGG
3' ss Score
3.58
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TACCACCCGAACAAACTCCTGTGCCCCAGGACTGCTACCATGGTAACGGGCAGAGTTATCGAGGCACGTCGTCCACTACTATCACAGGAAGGAAATGCCAGTCGTGGTCATCGATGACACCACACAGGCATCTGAAGACCCCAGAAAACTACCCAAATGC
Seq A exon
TGGCTTGACAATGAACTACTGCAGAAATCCAGATGCCGATAAGAGCCCCTGGTGTTATACCACCGATCCGAGAGTCAGATGGGAGTTCTGCAACCTGAAGAAATGTTCAGAAACTCCAGAGCAGGTGCCTGCGGCTCCCCAAGCCCCAGGCGTAGAGAATCCTCCTGAAGCAG
Seq C2 exon
ACTGCATGATCGGGATGGGCAAAAGCTACCGCGGCAAGAAGGCCACCACGGTGGCCGGTGTCCCCTGCCAGGAGTGGGCGGCCCAGGAGCCCCACCACCACAGCATCTTCACTCCAGAGACAAACCCACAGTCAGGGCTGGAGAGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001271-'11-16,'11-14,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=0.322 C2=0.240
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.8=77.8)
A:
PF0005113=Kringle=PD(44.9=59.3)
C2:
PF0005113=Kringle=PU(60.0=96.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGACTGCTACCATGGTA
R:
GGAGTGAAGATGCTGTGGTGG
Band lengths:
251-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]