MmuEX6075146 @ mm10
Exon Skipping
Gene
ENSMUSG00000059481 | Plg
Description
plasminogen [Source:MGI Symbol;Acc:MGI:97620]
Coordinates
chr17:12398090-12404161:+
Coord C1 exon
chr17:12398090-12398252
Coord A exon
chr17:12403051-12403232
Coord C2 exon
chr17:12404013-12404161
Length
182 bp
Sequences
Splice sites
3' ss Seq
CACTGCTTTGGGATTTACAGTGG
3' ss Score
3.48
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
TTCCACCAGAGGAGCAAACACCTGTGGTCCAGGAATGCTACCAGAGCGATGGGCAGAGCTATCGGGGTACATCGTCCACTACCATCACAGGGAAGAAGTGCCAGTCCTGGGCAGCTATGTTTCCACACAGGCATTCGAAGACCCCAGAGAACTTCCCAGATGC
Seq A exon
TGGCTTGGAGATGAACTACTGCAGGAACCCGGATGGTGACAAGGGCCCTTGGTGCTACACCACTGACCCGAGCGTCAGGTGGGAATACTGCAACCTGAAGCGGTGCTCAGAGACAGGAGGGAGTGTTGTGGAATTGCCCACAGTTTCCCAGGAACCAAGTGGGCCGAGCGACTCTGAGACAG
Seq C2 exon
ACTGCATGTATGGGAATGGCAAAGACTATCGGGGCAAAACGGCCGTCACTGCAGCTGGCACCCCCTGCCAGGGATGGGCTGCCCAGGAGCCCCACAGGCACAGCATCTTCACCCCACAGACAAACCCACGGGCAGGTCTGGAAAAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059481-'15-22,'15-17,19-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.503 A=0.446 C2=0.260
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.8=76.4)
A:
PF0005113=Kringle=PD(44.9=56.5)
C2:
PF0005113=Kringle=PU(60.0=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGGTACATCGTCCACTAC
R:
GTTCTTTTCCAGACCTGCCCG
Band lengths:
251-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types