DreEX0056346 @ danRer10
Exon Skipping
Gene
ENSDARG00000023111 | plg
Description
plasminogen [Source:ZFIN;Acc:ZDB-GENE-030131-1411]
Coordinates
chr20:42798266-42800218:-
Coord C1 exon
chr20:42800062-42800218
Coord A exon
chr20:42799762-42799976
Coord C2 exon
chr20:42798266-42798414
Length
215 bp
Sequences
Splice sites
3' ss Seq
GCATGTCGTGATTTATGCAGAGA
3' ss Score
3.81
5' ss Seq
AAGGTGCAT
5' ss Score
4.62
Exon sequences
Seq C1 exon
AGGAGCCCGTGATCCCCCAGGGTGAGGAATGTTATGAGGGTGATGGAAGTTCATACCGAGGTGTCATGTCTGAGACCATAAGTGGAAAGAAATGCCAGTTCTGGACATCCATGGAGCCTCATCGACATTCCAAAACACCTCAGAACTTTCCCAAAGC
Seq A exon
AGATCTAAGGAGAAACCTGTGCAGAAACCCAGATGGAGACAGAGCCCCTTGGTGTTACACCACAGATCCCACAGTTCGGTGGGAGTACTGCAATATTGAGCGGTGTGACAACAGGCCCAACATACAGGAACCTCCTGCCAAACCAGCAGCTACAACTCCAACACAGTCTACTCCAGCTCAGTCTACTCCAGATCAATCTGCTCCCTCAGAAAAAG
Seq C2 exon
ATTGTAAAAATGGCAATGGAGCAGAATACCGGGGTTCCACATCCATGACTGTCATGGGAGTGACTTGCCAAGCATGGAGGTCAATGACCCCTCATCAGCATGCCAGTTTTACCCCTGAAACCCATCCAGACAAGGGTCTAGAGTCTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023111-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.566 A=0.603 C2=0.580
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.8=79.2)
A:
PF0005113=Kringle=PD(44.9=47.9)
C2:
PF0005113=Kringle=PU(60.0=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCGTGATCCCCCAG
R:
ACCCTTGTCTGGATGGGTTTC
Band lengths:
292-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]