GgaEX1000882 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWX6]
Coordinates
chr3:44692151-44694267:+
Coord C1 exon
chr3:44692151-44692316
Coord A exon
chr3:44693036-44693202
Coord C2 exon
chr3:44694119-44694267
Length
167 bp
Sequences
Splice sites
3' ss Seq
CAATATGTTTGCATTTGTAGGGA
3' ss Score
7.13
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
CTGTTGATCAGCCTGAGCAAGCTCAAGCAACTGAGGAGTGCTACCAAGGCAATGGTGTGAGTTATCGTGGTACAGCATCTTTCACTATCACAGGGAAGAAATGTCAAGCCTGGAACTCAATGTCACCACACCGTCACAATAAAACTTCAGAACACTTCCCAAATGC
Seq A exon
GGACCTGAGGCAGAATTATTGCAGAAACCCAGATGCTGATAGCCGCCCATGGTGCTATACCACTGACCCAAGTGTGAGATGGGAGTACTGCAACCTCAAGAGATGTAGTGACAATATACAGACAATTCTACCAAAACCTCCTCAGACAACTCTGGAACCAAATCCCG
Seq C2 exon
ATTGCATTCATTCAAATGGTATAGATTATCGTGGTACAGTAGCAAGAACTGCAAGAGGCAGAATTTGTCAAGAGTGGAGTTCTCAGACACCACATAAACACGACTACTTCACTCCAAGGACTCATCCAAAATCAGGCCTGGAAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004293-'10-16,'10-15,11-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.411 A=0.202 C2=0.150
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.8=75.0)
A:
PF0005113=Kringle=PD(44.9=61.4)
C2:
PF0005113=Kringle=PU(60.0=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCTCAAGCAACTGAGGA
R:
TGTGGTGTCTGAGAACTCCACT
Band lengths:
244-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]