RnoEX6000920 @ rn6
Exon Skipping
Gene
ENSRNOG00000017223 | Plg
Description
plasminogen [Source:RGD Symbol;Acc:619893]
Coordinates
chr1:48537722-48539565:-
Coord C1 exon
chr1:48539446-48539565
Coord A exon
chr1:48538618-48538802
Coord C2 exon
chr1:48537722-48537870
Length
185 bp
Sequences
Splice sites
3' ss Seq
CACTGCTTTGGGATTTACAGTGG
3' ss Score
3.48
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTACCAGAACCTCCTCATACAGCACTGGCGACCAAGTGTTTACTACATGAGCCTGTGGGAGACATTTCTGATTCACACCCACAACCAGAAGTACAGCGTATTTCAACTGAAAGAAAGCAG
Seq A exon
TGGCTTGGAGATGAACTACTGCAGGAACCCAGATAATGACCAGAGGGGCCCTTGGTGCTTCACCACTGACCCGAGCGTCAGGTGGGAATACTGCAACCTGAAGCGGTGCTCGGAGACAGGAGGGGGTGTTGCGGAATCAGCCATAGTCCCCCAAGTTCCCAGTGCGCCAGGCACCTCTGAGACAG
Seq C2 exon
ACTGCATGTATGGGAATGGCAAAGAATATCGGGGCAAAACGGCCGTCACTGCAGCTGGAACCCCCTGCCAGGAATGGGCTGCCCAGGAGCCCCACAGTCACAGAATCTTCACCCCACAGACAAACCCACGGGCAGGTCTGGAAAAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017223-'17-17,'17-16,18-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.291 C2=0.233
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(10.4=12.2),PF0005113=Kringle=PU(40.3=61.0)
A:
PF0005113=Kringle=PD(45.6=57.1)
C2:
PF0005113=Kringle=PU(60.0=96.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGCGACCAAGTGTTTA
R:
ATTCTTTTCCAGACCTGCCCG
Band lengths:
248-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]