GgaEX7003061 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GMH5]
Coordinates
chr3:44662197-44665329:+
Coord C1 exon
chr3:44662197-44662356
Coord A exon
chr3:44664009-44664202
Coord C2 exon
chr3:44665181-44665329
Length
194 bp
Sequences
Splice sites
3' ss Seq
ATTTGTACTTATTTTTGCAGGGA
3' ss Score
8.74
5' ss Seq
CTGGTAACA
5' ss Score
4.6
Exon sequences
Seq C1 exon
ATGTGGCTACACATGTATTCTTGCCAGAGGAGTGCTATCGAGGCACAGGCCTGAATTATCGTGGCACAGCTTCCATCACTGTATCAGGACGGAAATGCCAAGCCTGGAACTCCAAATCTCCACATGACCATGGAAAGACCCCAGAAAAATTCCCAAATGC
Seq A exon
GGATTTGAGGGAGAACTATTGTAGAAATCCAGATGGTGATAGCCGTCCATGGTGCTTCACCACAGACCCCAGCGTTCATTGGGAGTACTGCAGTCTCAAGAAGTGTGATGATCATACTGAGGAAGCCACACCAAATGACCCCCCTGCAACAGTGGCACAAAATGTTGGCCTGACTATCCCCCCCACGACATCTG
Seq C2 exon
ACTGCATTAACAGCAATGGTAAAGACTATCGCGGCACAGTAGCAAAAACTGGAAGTGGCAGAACTTGTCAAGAGTGGAGTTCTCAGAGCCCTCATAGCCACAAATACTTCACTCCTCTCACTCATCCAAGGGCAGGCCTGGATAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028886-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.333 C2=0.140
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.8=77.8)
A:
PF0005113=Kringle=PD(44.9=53.0)
C2:
PF0005113=Kringle=PU(60.0=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCAGAGGAGTGCTATCGA
R:
TTGTGGCTATGAGGGCTCTGA
Band lengths:
243-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]