HsaEX1022027 @ hg38
Exon Skipping
Gene
ENSG00000198670 | LPA
Description
lipoprotein(a) [Source:HGNC Symbol;Acc:HGNC:6667]
Coordinates
chr6:160547789-160549075:-
Coord C1 exon
chr6:160548975-160549075
Coord A exon
chr6:160548478-160548659
Coord C2 exon
chr6:160547789-160547937
Length
182 bp
Sequences
Splice sites
3' ss Seq
TATTGCTTTGGAATTTCCAGTGG
3' ss Score
4.51
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCACTTACTCTGTCCTGCCGCCTGTGAAGAAGGTGCCTGTTTCTCCCTTGCCTTCTGCCATGACTGTAAATTTCCAGAGGCCTCCCCAGCAATGTGGAACT
Seq A exon
TGGCCTGACAATGAACTACTGCAGGAATCCAGATGCCGATACAGGCCCTTGGTGTTTTACCATGGACCCCAGCATCAGGTGGGAGTACTGCAACCTGACGCGATGCTCAGACACAGAAGGGACTGTGGTCGCTCCTCCGACTGTCATCCAGGTTCCAAGCCTAGGGCCTCCTTCTGAACAAG
Seq C2 exon
ACTGTATGTTTGGGAATGGGAAAGGATACCGGGGCAAGAAGGCAACCACTGTTACTGGGACGCCATGCCAGGAATGGGCTGCCCAGGAGCCCCATAGACACAGCACGTTCATTCCAGGGACAAATAAATGGGCAGGTCTGGAAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198670-'39-38,'39-37,40-38
Average complexity
C2
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.250 C2=0.200
Domain overlap (PFAM):
C1:
NA
A:
PF0005113=Kringle=PD(44.9=56.5)
C2:
PF0005113=Kringle=PU(60.0=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTACTCTGTCCTGCCGC
R:
TTTTTCCAGACCTGCCCATTT
Band lengths:
246-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains