GgaEX1000882 @ galGal3
Exon Skipping
Gene
ENSGALG00000004293 | F1NWX6_CHICK
Description
NA
Coordinates
chr3:47275351-47277257:+
Coord C1 exon
chr3:47275351-47275516
Coord A exon
chr3:47276236-47276402
Coord C2 exon
chr3:47277243-47277257
Length
167 bp
Sequences
Splice sites
3' ss Seq
CAATATGTTTGCATTTGTAGGGA
3' ss Score
7.13
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
CTGTTGATCAGCCTGAGCAAGCTCAAGCAACTGAGGAGTGCTACCAAGGCAATGGTGTGAGTTATCGTGGTACAGCATCTTTCACTATCACAGGGAAGAAATGTCAAGCCTGGAACTCAATGTCACCACACCGTCACAATAAAACTTCAGAACACTTCCCAAATGC
Seq A exon
GGACCTGAGGCAGAATTATTGCAGAAACCCAGATGCTGATAGCCGCCCATGGTGCTATACCACTGACCCAAGTGTGAGATGGGAGTACTGCAACCTCAAGAGATGTAGTGACAATATACAGACAATTCTACCAAAACCTCCTCAGACAACTCTGGAACCAAATCCCG
Seq C2 exon
CTTCACCACCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004293-'9-11,'9-10,11-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.366 A=0.268 C2=0.667
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.8=75.0)
A:
PF0005113=Kringle=PD(44.9=61.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]