BtaEX6050371 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001271 | PLG
Description
Bos taurus plasminogen (PLG), mRNA. [Source:RefSeq mRNA;Acc:NM_173951]
Coordinates
chr9:98030564-98033904:-
Coord C1 exon
chr9:98033732-98033904
Coord A exon
chr9:98031497-98031645
Coord C2 exon
chr9:98030564-98030657
Length
149 bp
Sequences
Splice sites
3' ss Seq
CCGTTCCCTCTTCCCTCCAGACT
3' ss Score
9.98
5' ss Seq
AACGTAAGC
5' ss Score
7.35
Exon sequences
Seq C1 exon
TGGCTTGACAATGAACTACTGCAGAAATCCAGATGCCGATAAGAGCCCCTGGTGTTATACCACCGATCCGAGAGTCAGATGGGAGTTCTGCAACCTGAAGAAATGTTCAGAAACTCCAGAGCAGGTGCCTGCGGCTCCCCAAGCCCCAGGCGTAGAGAATCCTCCTGAAGCAG
Seq A exon
ACTGCATGATCGGGATGGGCAAAAGCTACCGCGGCAAGAAGGCCACCACGGTGGCCGGTGTCCCCTGCCAGGAGTGGGCGGCCCAGGAGCCCCACCACCACAGCATCTTCACTCCAGAGACAAACCCACAGTCAGGGCTGGAGAGAAAC
Seq C2 exon
TACTGCCGTAATCCTGACGGTGATGTCAACGGGCCCTGGTGCTACACCATGAACCCAAGGAAGCTTTTTGACTACTGTGACGTCCCTCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001271-'12-17,'12-16,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.322 A=0.240 C2=0.062
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(44.9=59.3)
A:
PF0005113=Kringle=PU(60.0=96.0)
C2:
PF0005113=Kringle=PD(37.5=93.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGAAATCCAGATGCCG
R:
ACACTGAGGGACGTCACAGTA
Band lengths:
249-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]