DreEX0056347 @ danRer10
Exon Skipping
Gene
ENSDARG00000023111 | plg
Description
plasminogen [Source:ZFIN;Acc:ZDB-GENE-030131-1411]
Coordinates
chr20:42798092-42799976:-
Coord C1 exon
chr20:42799762-42799976
Coord A exon
chr20:42798266-42798414
Coord C2 exon
chr20:42798092-42798185
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTCTTTTAACAAGATT
3' ss Score
4.43
5' ss Seq
AATGTAGGT
5' ss Score
5.12
Exon sequences
Seq C1 exon
AGATCTAAGGAGAAACCTGTGCAGAAACCCAGATGGAGACAGAGCCCCTTGGTGTTACACCACAGATCCCACAGTTCGGTGGGAGTACTGCAATATTGAGCGGTGTGACAACAGGCCCAACATACAGGAACCTCCTGCCAAACCAGCAGCTACAACTCCAACACAGTCTACTCCAGCTCAGTCTACTCCAGATCAATCTGCTCCCTCAGAAAAAG
Seq A exon
ATTGTAAAAATGGCAATGGAGCAGAATACCGGGGTTCCACATCCATGACTGTCATGGGAGTGACTTGCCAAGCATGGAGGTCAATGACCCCTCATCAGCATGCCAGTTTTACCCCTGAAACCCATCCAGACAAGGGTCTAGAGTCTAAT
Seq C2 exon
CAATGCAGAAACCCAGACAGTGATGTAAATGGGCCTTGGTGTTACACAACAGACCCAAGTAAAAAGTGGGATTACTGTCAGATCCCAGACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023111-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=0.580 C2=0.094
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(44.9=47.9)
A:
PF0005113=Kringle=PU(60.0=96.0)
C2:
PF0005113=Kringle=PD(37.5=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGCAGAAACCCAGATGG
R:
GTTGTGTAACACCAAGGCCCA
Band lengths:
250-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]