RnoEX6000921 @ rn6
Exon Skipping
Gene
ENSRNOG00000017223 | Plg
Description
plasminogen [Source:RGD Symbol;Acc:619893]
Coordinates
chr1:48536582-48538802:-
Coord C1 exon
chr1:48538618-48538802
Coord A exon
chr1:48537722-48537870
Coord C2 exon
chr1:48536582-48536675
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTCCCTTCCTACAGACT
3' ss Score
10.86
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
TGGCTTGGAGATGAACTACTGCAGGAACCCAGATAATGACCAGAGGGGCCCTTGGTGCTTCACCACTGACCCGAGCGTCAGGTGGGAATACTGCAACCTGAAGCGGTGCTCGGAGACAGGAGGGGGTGTTGCGGAATCAGCCATAGTCCCCCAAGTTCCCAGTGCGCCAGGCACCTCTGAGACAG
Seq A exon
ACTGCATGTATGGGAATGGCAAAGAATATCGGGGCAAAACGGCCGTCACTGCAGCTGGAACCCCCTGCCAGGAATGGGCTGCCCAGGAGCCCCACAGTCACAGAATCTTCACCCCACAGACAAACCCACGGGCAGGTCTGGAAAAGAAT
Seq C2 exon
TACTGCCGAAACCCGGATGGGGATGTCAATGGGCCCTGGTGCTATACAATGAACCCCAGAAAACTTTACGACTATTGTAACATTCCCCTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017223-'18-18,'18-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.291 A=0.233 C2=0.010
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(45.6=57.1)
A:
PF0005113=Kringle=PU(60.0=96.0)
C2:
PF0005113=Kringle=PD(37.5=93.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTGGAGATGAACTACTGC
R:
GGGGTTCATTGTATAGCACCAGG
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]