MmuEX6075145 @ mm10
Exon Skipping
Gene
ENSMUSG00000059481 | Plg
Description
plasminogen [Source:MGI Symbol;Acc:MGI:97620]
Coordinates
chr17:12403051-12405265:+
Coord C1 exon
chr17:12403051-12403232
Coord A exon
chr17:12404013-12404161
Coord C2 exon
chr17:12405172-12405265
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTCCCTTCCTACAGACT
3' ss Score
10.86
5' ss Seq
AACGTAAGA
5' ss Score
7.69
Exon sequences
Seq C1 exon
TGGCTTGGAGATGAACTACTGCAGGAACCCGGATGGTGACAAGGGCCCTTGGTGCTACACCACTGACCCGAGCGTCAGGTGGGAATACTGCAACCTGAAGCGGTGCTCAGAGACAGGAGGGAGTGTTGTGGAATTGCCCACAGTTTCCCAGGAACCAAGTGGGCCGAGCGACTCTGAGACAG
Seq A exon
ACTGCATGTATGGGAATGGCAAAGACTATCGGGGCAAAACGGCCGTCACTGCAGCTGGCACCCCCTGCCAGGGATGGGCTGCCCAGGAGCCCCACAGGCACAGCATCTTCACCCCACAGACAAACCCACGGGCAGGTCTGGAAAAGAAC
Seq C2 exon
TACTGCCGAAACCCAGATGGGGATGTGAATGGTCCTTGGTGCTATACAACAAACCCCAGAAAACTTTATGACTATTGTGACATCCCCCTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059481-'19-21,'19-19,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.446 A=0.260 C2=0.031
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(44.9=56.5)
A:
PF0005113=Kringle=PU(60.0=96.0)
C2:
PF0005113=Kringle=PD(37.5=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACTGCAGGAACCCGGAT
R:
AGGGGGATGTCACAATAGTCA
Band lengths:
258-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types