BtaEX6050867 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007371 | SCAMP1
Description
Bos taurus secretory carrier membrane protein 1 (SCAMP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076054]
Coordinates
chr10:9454134-9467474:+
Coord C1 exon
chr10:9454134-9454293
Coord A exon
chr10:9464639-9464740
Coord C2 exon
chr10:9467357-9467474
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCCTTTCTTTTTAAAACCAGGAG
3' ss Score
7.74
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TCCATGCTGTAACACTATTTCTAAATATCTTCGGATGCTTGGCTTGGTTTTGTGTTGATCCTCCAAGAGGGGTTGATTTTGGATTGAGTATCCTGTGGTTCTTACTTTTTACTCCTTGTTCATTTGTCTGTTGGTACAGACCACTTTACGGAGCTTTCAG
Seq A exon
GAGTGACAGCTCCTTCCGGTTCTTCGTGTTCTTTTTTGTCTATATCTGTCAGTTTGCTGTGCACGTACTCCAGGCTGCAGGATTTCATAACTGGGGTAACTG
Seq C2 exon
TGGTTGGATTTCATCCCTTACTGGTCTCAACAAAAGTATTCCTGTTGGAATCATGATGATTATCATAGCAGCACTTTTCACAGCATCAGCAGTCATCTCACTAGTTATGTTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007371-'22-11,'22-10,23-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.8=100)
A:
PF041448=SCAMP=FE(19.1=100)
C2:
PF041448=SCAMP=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCGGATGCTTGGCTTGG
R:
ATAACTAGTGAGATGACTGCTGATGC
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]